GgaEX1022249 @ galGal4
Exon Skipping
Gene
ENSGALG00000009282 | ELMSAN1
Description
ELM2 and Myb/SANT-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19853]
Coordinates
chr5:25412313-25417766:+
Coord C1 exon
chr5:25412313-25412445
Coord A exon
chr5:25414212-25414303
Coord C2 exon
chr5:25416074-25417766
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTGCATGCTTTCAGGTC
3' ss Score
10.89
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GTTAGGTCTTGCTTTTTCTCTGTGCAGTGTAAAAGCAATGCAGAGTATCATAACACCTCAGTATATCTGGAGACAAGACACATTATCTTCTGGGAATTATGGTATCAGAACTGGCATTGTGCTTTGTTTGAAG
Seq A exon
GTCTCTGAGATTTAAGGCCATTTAGTTGATACCTGCAAATGGTGCTTTACTGAAGGTTTGCCCCATAATTCTTGATGACCAGCTCAGCTCAG
Seq C2 exon
GACCTATAACTAAGTGGACCCTACTGACCTGTGAACAACAAAGGATAAGAGTGAAAAGAAGTGTGAGAAGCACACAAAGAAAAAGGAAGTGGAGGCACTTTCATCTGGATTTCTTTCCTGCCCTTTATTACTAATACTGAATGGAAAAGAGAGATTTATGTGCCTTTTCTCCCCCAGTCTCAGGGATGGGTGTATTATAAATACGGTGTGTGCAGCTGGAAGAATAGACTGAATCATGAATCTTCAGGCTCAGCAAAAGTCTTCAACCAAAAGGACTGGGAAACGAATTACTTATTTTAATGAGCAAGATATAACTGTGTCATCAAAAGAGCCACAGCAGCAGCTTAAAGAAGGACAGTATTATGGTCATGGAGGGAATATTCCAGCCTCCCAAACCATGGAGATTCCTCACACAGCAGGATTAACAAGTGCCACCAGCAATGTTGCTTTGATGAACTCAGTTTACAGTCAAGACAGAGGAGAATCAATGATGATGTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009282_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.779
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCTTGCTTTTTCTCTGTGCA
R:
TGTTCACAGGTCAGTAGGGTCC
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]