GgaEX1022255 @ galGal4
Exon Skipping
Gene
ENSGALG00000009282 | ELMSAN1
Description
ELM2 and Myb/SANT-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19853]
Coordinates
chr5:25434007-25437132:+
Coord C1 exon
chr5:25434007-25434523
Coord A exon
chr5:25435230-25435747
Coord C2 exon
chr5:25436991-25437132
Length
518 bp
Sequences
Splice sites
3' ss Seq
CCACTTATTTCCTGTGGCAGCCC
3' ss Score
6.11
5' ss Seq
TGGGTGGGT
5' ss Score
3.82
Exon sequences
Seq C1 exon
AGAGCCGCAGTGCTCACATGAAGAGCCATGCAGAGCAGGAGAAGAAGGCAGCCGCACTGAAGCAGCAAGAGAGAGAGGCAGCAGCAGCAGCAGAGGCGGCAGCAGCGGCAGCCCACAGCCAGGCCCAGCAGGAAGAGAGCAGTGAGAGTGGGAGCAACAGCAGTGGAAGCAGCAGTGGGAGCTCGGATGAGGATGGAGAAATATAGCAGCAGACTAGAAATGGAGGGAGTAGCAAGGCTGGACCTATCACCCTCTCAGTGGTTTCACATTTTTTGCTTGCACTTTTCTGGCCTGAACCATCAGGTCTCAGTTTCAGTGCTGCGGCCTCCTCGTGCCACATGTTCCACTTCACCTTGCCAGTACTGACTGAGCCAGAGTGGCGGACAAGAAGATTTGTTTCAGCTTGGATTTAAAAACAAAAAACAAAAACAAATAAGATTTCTATTCTATTTATAGTCATACCTGAGGTACACAATTGAACAACGTCACCTGCAGTGGAA
Seq A exon
CCCTTATTTATCTTCTGAAACTTTTGCCACTGAGAGCTTATATTCATGGGGCCCTTGTTTTCCAGATGCTTCCTGCCAGACAGCATGTGACTGTATATGCAGGAGGCTTTTCACTTCCACACAACTGGCTGGACAGCTGTGCCTGATGGGTTGTCCTTCTGTCCCCCCTTAGCTGGTTGAAATGCTGACTTCCTTCAGAACTGACACGTGCTAATGGCCAAAAAAAAGATCTAGCCACCAAAAGTCTGCTGATAAATGAAAGTTAAGAAGATGCAAAAGGAGTCCCGGTGACATAAATTGCACAGGATTGGTCTGTGCATCTTTATAGCCTACTTCATCGTTACTTCATAAAGATGTAGAGAATCAGATCACTTCCTTGCTCTCACAGTTGATCAGTCCCAGCTCCATGTTCTGGTTTCTTCAGTGCAGTGTGTGGAGGCAGCAGTTCCTGGGTACCAGCAGTGCATCACATCCCATGCATGCTGCTGCTGTGGTGCATGGCCAAGTAGGGATCCTGG
Seq C2 exon
ACGGTGATCAGGAGCAGCCTGAAGTCTTTTAGGAAAAAGCAAGGGAAAGTGTGGAACAGCAGTGTAGTACCAGCTAGAAAGTGGGGTGCTGAACTAGAAGAACTCCTTCGTGTCCACCAGGAAAACAAATCTGCACGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009282_MULTIEX2-5/6=4-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.919 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF138241=zf-Mss51=PD(58.2=42.7)
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTTGCACTTTTCTGGCCT
R:
TGGTGGACACGAAGGAGTTCT
Band lengths:
347-865
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]