GgaEX1022496 @ galGal4
Exon Skipping
Gene
ENSGALG00000007078 | ENTPD1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:RefSeq peptide;Acc:NP_001012925]
Coordinates
chr6:21551707-21572371:+
Coord C1 exon
chr6:21551707-21551846
Coord A exon
chr6:21570684-21570789
Coord C2 exon
chr6:21572238-21572371
Length
106 bp
Sequences
Splice sites
3' ss Seq
GAGCCAACTATCTCCATCAGGAA
3' ss Score
3.36
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
CTATGGACCACTGTAGCGCCCATTTTCACTTGAGCACCTCTCACTAAGGCGGCTCAAAGCCGGTGGAGGCTTAGAAAGGAAGAGGGAGAGAGAGACGGGGAGGAGGGAGCGAGCGTCGGCACTGATGGACGAGCCAAAGG
Seq A exon
GAAGAAAAGTCTCCCAGCTGTCACGCTCTGCTGTTTTCAATCATTTGAGTTCAGGGGCCCTTTTGAAGAAAGCGGTGTAAAATGCATTCTGCCCTCCTACTGTCTG
Seq C2 exon
TCACAGGTACCAAACCAAAGATGTCCACAACAAGGAAAATTCTACTCATACTAGGATTCCTCTCCACTTTGGCTGCAATTGCTTTAATTACTGTAGCAGTGACCCAAAACCAGCCACTTCCGAAGAATATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007078_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.308 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0115012=GDA1_CD39=PU(1.8=17.8)
Main Inclusion Isoform:
ENSGALT00000011467fB7171
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTGTAGCGCCCATTTTCA
R:
GAAGTGGCTGGTTTTGGGTCA
Band lengths:
253-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]