GgaEX1022661 @ galGal4
Exon Skipping
Gene
ENSGALG00000012453 | EPC2
Description
enhancer of polycomb homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:24543]
Coordinates
chr7:34237950-34246475:+
Coord C1 exon
chr7:34237950-34238109
Coord A exon
chr7:34239393-34239999
Coord C2 exon
chr7:34246330-34246475
Length
607 bp
Sequences
Splice sites
3' ss Seq
TTATCTTTTTTTTTTTTTAGTAG
3' ss Score
8.46
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GAACATCACTTGCAACGGGCTATCTCAGCACAACAAGTTTTCAGAGAAAAGAAAGAGAGCATGGTTATCCCAGTTCCTGAAGCAGAGAGCAATGTGAACTATTACAATCGTTTGTATAAAGGAGAATTTAAGCAACCAAAGCAGTTCATTCACATTCAAC
Seq A exon
TAGAAGAAACACTCCTGCAAGCAAGGCAGGTTGACTAAACTGAAACAAAGCTGCTTTTCTTGGACACTGCCAGAAATGGTGTTAATACTGCTAACGATCAGGATTAGAAGTGTTAAATATATAATGTTGGAGTGTGCTTTGTCTTGTTAAGACTTGATCTTTCTGAGGACCTAATAGAAAGTATTAGAGCTGCAAGTAAATGTCAGATAGTTCTCCAATATAGCCAGGTTGCAGTAGGTGTGATACAAAGCTGCTCTATGCTTGTGGTCACTGCTTAGCAGTTGTTCTAATGCTGAAAGCAAGAAGAGTAGTGGTATGTGCTTTGGCCATGGAAGCTACATAAACCATCAGATGACAAGAGGCTGTGTATTGTATTCCATATTTGTAGTTATTACTAAGAAATTATGAATAACCTTCAATGATTTTGCAGCTCATTTTATAGATGAGGATGTTAATCCTTACTAGAATAATTCTTTTTTGTGTACCGCTAGTTCAAACTAGAGGGAAGTTTGTTCTTAGTGAGACACACAGACATGCACAGAAAATATCCACTAGCAACAATAAAAAGCAACCCAGAGGGGCGGTCCCACAGCTGATACTATTGCAT
Seq C2 exon
CCTTTAATCTGGACAATGAACAGCCAGATTATGATATGGACTCTGAGGATGAAACCTTATTGAACAGACTAAATCGGAAGATGGAAATCAAGCCACTGCAGTTTGAAATAATGATTGACAGACTTGAAAAAGCCAGTTCTAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012453_MULTIEX1-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.210 A=0.083 C2=0.306
Domain overlap (PFAM):
C1:
PF105134=EPL1=FE(36.8=100),PF122533=CAF1A=PU(65.5=70.4)
A:
PF105134=EPL1=PD(8.3=69.2)
C2:
PF105134=EPL1=PD(30.6=89.8),PF122533=CAF1A=PD(32.8=38.8)
Main Inclusion Isoform:
ENSGALT00000020355fB7197
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATCACTTGCAACGGGCTA
R:
ACTAGAACTGGCTTTTTCAAGTCTGT
Band lengths:
302-909
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]