Special

GgaEX1023475 @ galGal3

Exon Skipping

Description
NA
Coordinates
chr3:88322424-88337477:+
Coord C1 exon
chr3:88322424-88322598
Coord A exon
chr3:88334149-88334331
Coord C2 exon
chr3:88337311-88337477
Length
183 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTAATGCAGTTG
3' ss Score
8.07
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
AGTGATGCTGAAAATTGGTTTTGTGAATGCCCTAAACTCTACTCTGGAAGACTGTGCCAGTTTATGACTTGTGATGAAAGTCCATGTGGAAATGGTGCTACATGCTTTCCAAAGTCCAGACAAGATGTTGTTTGCCTTTGTCCATATGGAAGATCTGGCATCCTCTGCAATGATG
Seq A exon
TTGTTAATATTAGCCAGCCTAGTTTCAGTGGCACAGATGTCTTTGGATATACTTCATTCCTAGCTTATTCTACAATCCCAGATATCACCTTCTACTATGAATTCCACTTAAAATTTCAGTTGTTAAACCACCACTCAGCTTTACAGGACAACTTGATATTTTTCACTGGACAGAAGGGCCAAG
Seq C2 exon
GTCTGAATGGAGATGATTTTTTGGTATTAGGCCTATGTGATGGCAGAGTGGTATATAGCTACAATCTAGGTTCTGGCACAGCAACAATCATTAGCAAACCACTTGACTTGACACTCAATATTCATGTCATCCATCTTGGCAGATATCTCCAGAAAGGCTGGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016263-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0000822=EGF=WD(100=54.2)
A:
PF0221019=Laminin_G_2=PU(12.2=25.8)
C2:
PF0221019=Laminin_G_2=FE(42.0=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGAAGACTGTGCCAGTT
R:
AGTGTCAAGTCAAGTGGTTTGCT
Band lengths:
249-432
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]