GgaEX1024442 @ galGal4
Exon Skipping
Gene
ENSGALG00000009841 | FASTKD1
Description
FAST kinase domains 1 [Source:HGNC Symbol;Acc:HGNC:26150]
Coordinates
chr7:18157405-18159188:+
Coord C1 exon
chr7:18157405-18157514
Coord A exon
chr7:18158000-18158529
Coord C2 exon
chr7:18159070-18159188
Length
530 bp
Sequences
Splice sites
3' ss Seq
ATTCTGTTTTCATCTTCTAGAAC
3' ss Score
9.89
5' ss Seq
TACATTACC
5' ss Score
-25.03
Exon sequences
Seq C1 exon
ATTCCTCACTTTGAATGGAATTCTATGGTTCTGTCCACAAAACCTGAGCAGCTAGACTATCTGAGAAAACGTCTGTATGAAACACAGTGATACCAAAGATGTAATTACAA
Seq A exon
AACAGAGATAACGTGGGTGACAATGTCAGGGGAGAGGGTGTTGTGCGCTGAGGAACATCCAGCTACTTGCTTTTTCTACCCTGTGTCACGGTGTGTGCAAAAGAAGTAAAGGCTTGAATCCTCTGGAACGCCTTCACATACCTAAAAGGTAGAGTAGCTTGAGAGGTCTGGCAGTCACCCAGACCCATTAACACCTGCGGTCCAGTTCAGTGCAACTTGGAAGGGATAACTGAGGGATGAGGAGGAAGTACTGTTTATGTCAGACATAGGCACCCATTAGTGATTGGATAATTTGTGAAAATGTTTGTAATTATCAGTTGGACCACTCCTTTTTAATAGAAATAAAACAAAATTAATCTGTATAAGCTGCTTGTTCTGTAAATGAGAGTGCACAAAAGAGCAAAATAAGGCAGAAAACTGAAACAAGAAATTGAGACCAAGAAGAGTCTTCAGGGAGTCATAAATACTACCTTGGTTACCAGTGGTGAAAATGCTTTATATGTGATGTTTCAAAACCATGTGCCAGTTAC
Seq C2 exon
TCTGCTTCTGTACAGGTGGGCATCAAGTAGCAACTGGAGAGTGTAAGAAGTGACAGTGGCTGTAGCTGAAGGGATCAGTCAGGGATGGTCATGGGCTTCAGGTGGATCCCACAGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009841_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF083735=RAP=PD(38.3=76.7)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCACTTTGAATGGAATTCTATGGT
R:
GATCCACCTGAAGCCCATGAC
Band lengths:
215-745
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]