GgaEX1024583 @ galGal3
Exon Skipping
Gene
ENSGALG00000000327 | Q804J3_CHICK
Description
NA
Coordinates
chr28:337155-338029:+
Coord C1 exon
chr28:337155-337292
Coord A exon
chr28:337372-337422
Coord C2 exon
chr28:337914-338029
Length
51 bp
Sequences
Splice sites
3' ss Seq
TGTTTCCTGTTTTCTTGCAGATA
3' ss Score
12.93
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ACAGCATGAAAGGGACATGCTGGCTGAACATCCAGGATGGACGTTGTGAGGTGAACATCAATGGGGCCACACTGAAATCAGAGTGCTGTGCTACACTGGGAGCAGCATGGGGAAGCCCCTGCGAGCGCTGTGAGATTG
Seq A exon
ATACTGCCTGTCCCCGGGGCTATGCCAGGATGAAGGGGGTTACTTGTGAAG
Seq C2 exon
ATGTGAATGAGTGTGATGTCTTTCCTGGTGTCTGCCCAAATGGTCGCTGTGTGAACACAGCTGGCTCCTTTCGGTGTGAGTGTCCAGAAGGATTGACCCTCGATGGCACTGCTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327-'20-27,'20-26,21-27=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(80.5=70.2)
A:
PF0068312=TB=PD(17.1=38.9),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=PU(95.0=97.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCCACACTGAAATCAGAG
R:
AAAGGAGCCAGCTGTGTTCAC
Band lengths:
147-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]