GgaEX1024594 @ galGal3
Exon Skipping
Gene
ENSGALG00000000327 | Q804J3_CHICK
Description
NA
Coordinates
chr28:345892-347341:+
Coord C1 exon
chr28:345892-346014
Coord A exon
chr28:346716-346838
Coord C2 exon
chr28:347216-347341
Length
123 bp
Sequences
Splice sites
3' ss Seq
GGGTGCTTTTCTCTGCCCAGACT
3' ss Score
6.33
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ACATTGATGAATGTGAGATTGGGGCTCACAACTGTGACATGCACGCCTCCTGCATCAATGTGCCTGGGAGCTTCAAGTGCAAGTGTCGCACAGGCTGGCTTGGAGATGGACTGAAGTGCAATG
Seq A exon
ACTTGGACGAGTGTGCAACAGAAGAGCACAAGTGTAACCTGAATGCCAACTGCATCAACACACCGGGCTCCTACCGCTGCGCCTGCCGAGAAGGCTTCAATGGAGATGGCTTCTCTTGCTCAG
Seq C2 exon
ATGTGGATGAGTGTGCAGACAATGTGAACCTGTGTGAGAATGGGCAGTGTCTCAATGCACCTGGAGGTTACCGCTGCGAATGTGAGATGGGCTTCAATCCCACAGAGGACAGCAAGGCCTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327-'33-40,'33-39,34-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGATGAATGTGAGATTGGGGCT
R:
CAGGCCTTGCTGTCCTCTGT
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]