GgaEX1024603 @ galGal3
Exon Skipping
Gene
ENSGALG00000000327 | Q804J3_CHICK
Description
NA
Coordinates
chr28:351435-354111:+
Coord C1 exon
chr28:351435-351506
Coord A exon
chr28:353431-353556
Coord C2 exon
chr28:353986-354111
Length
126 bp
Sequences
Splice sites
3' ss Seq
CAGATGTTCTCTGTGTGCAGATA
3' ss Score
8.01
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
CTGAGTACCAGATCCTGTGTGGGAACCAGGCCCCTGGCTTTATCATCGACATCCACACAGGGAAGCCCATTG
Seq A exon
ATATCGATGAGTGCAGCGAGATCCCTGCTATCTGTACCAATGGTGTCTGCATCAACCAGATTGGCAGCTTCCGCTGTGAGTGCCCCATTGGATTCAGCTACAACAACATACTGCTCATCTGTGAAG
Seq C2 exon
ACATTGATGAATGCAGCAGTGGAGAGAACCTCTGCCAGCGCAATGCTGACTGCATCAACATCCCAGGCAGCTACAGGTGCGAATGCTCGACTGGATACAAGCTGTCACCTAGCGGAGCCTGCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327-'43-50,'43-49,44-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.4=20.0),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGTACCAGATCCTGTGTGG
R:
GCAGGCTCCGCTAGGTGA
Band lengths:
194-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]