GgaEX1025095 @ galGal4
Exon Skipping
Gene
ENSGALG00000013124 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr2:83448674-83462516:+
Coord C1 exon
chr2:83448674-83448835
Coord A exon
chr2:83449637-83449674
Coord C2 exon
chr2:83462434-83462516
Length
38 bp
Sequences
Splice sites
3' ss Seq
CTTTCCATCCATCTTTTTAGCAT
3' ss Score
9.13
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GCCGTATCGGTTCATGGAATGCTGGCAATGATGATTCACCTAATGCAACGGATGATGCAGCAGATGAGATAATGGATCGCATTGTAAAGTCCGCCACCCAAGTGCCAAGCCAGCGAGCGGTGCCTAGAGAGAGGAAGCGGTCACGAGCAAATAGGAAGTCAT
Seq A exon
CATTTCTTGGAAGTTAGGACAAAGAGAAGTCAACAACA
Seq C2 exon
TGAGAAGGACACTAAAGAGCGGACTGACACCAGAAGAAGCCAAAGCATTGGGCCTCATCAGCACCTCTGAGATGCAGGTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013124_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.852
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000037064fB7622
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGTAAAGTCCGCCACCCA
R:
CTTCTTCTGGTGTCAGTCCGC
Band lengths:
122-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]