GgaEX1025271 @ galGal4
Exon Skipping
Gene
ENSGALG00000012525 | FMNL2
Description
formin-like 2 [Source:HGNC Symbol;Acc:HGNC:18267]
Coordinates
chr7:35012377-35014482:+
Coord C1 exon
chr7:35012377-35012453
Coord A exon
chr7:35013464-35013574
Coord C2 exon
chr7:35014389-35014482
Length
111 bp
Sequences
Splice sites
3' ss Seq
GGGTTTTCTTCTTGTGGCAGGAC
3' ss Score
7.11
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
TATGGATTCAATATGGTCATGTCGCACCCGCATGCCGTTAACGAAATTGCACTAAGTCTGAACAACAAGAATCCCAG
Seq A exon
GACAAAAAAATGGATGAGTAAGAATTGAAAGTGATCCGTGTAAAATTTCCTGGGGAAGTGAACATTTTATCTGGTTTCCAAAGATAACCTTGACACTTTGAAAGCCAAAAG
Seq C2 exon
GACAAAGGCCCTTGTCCTAGAGCTCCTGGCTGCTGTTTGTCTCGTCAGAGGAGGGCATGAAATCATTTTGTCTGCGTTTGATAACTTTAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012525_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(33.3=100)
A:
PF063718=Drf_GBD=PD(10.3=70.0)
C2:
PF063718=Drf_GBD=PD(18.7=43.8),PF0636711=Drf_FH3=PU(6.8=43.8)
Main Inclusion Isoform:
ENSGALT00000037752fB7646
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGATTCAATATGGTCATGTCGCA
R:
CTCCTTAAAGTTATCAAACGCAGACA
Band lengths:
170-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]