GgaEX1025964 @ galGal4
Exon Skipping
Gene
ENSGALG00000013135 | GALNT1
Description
polypeptide N-acetylgalactosaminyltransferase 1 [Source:RefSeq peptide;Acc:NP_001006381]
Coordinates
chr2:83818602-83821627:-
Coord C1 exon
chr2:83821493-83821627
Coord A exon
chr2:83819172-83819673
Coord C2 exon
chr2:83818602-83818671
Length
502 bp
Sequences
Splice sites
3' ss Seq
CGTTTCTTTTCGTGTTCCAGAAA
3' ss Score
9.86
5' ss Seq
GTTGTAAGG
5' ss Score
4.34
Exon sequences
Seq C1 exon
GTTTTCTCATATACAGCCAACAAAGAAATTCGAACAGATGATTTGTGTTTAGATGTCTCCAAACTTAATGGCCCGGTAACAATGCTCAAGTGCCACCATCTAAAAGGAAATCAGCTTTGGGAATATGATCCAGTG
Seq A exon
AAATTAACCCTGCTGCATGTGAACAGTAATCAGTGCCTGGACAAAGCCACCGAAGAAGACAGCCAGGTACCCAGCATCAGAGACTGCAACGGCAGCCGCTCTCAGCAGTGGCTACTTCGCAACGTCACCCTTCCAGAAATATTCTGAGAGGTTCTAAAGAAAATAAAGGATTGACTGGGCTACCTCGGCTAATATTTTGGCTACACTGTTAAGTAGCAACAGAAGGAAACTTCTCTGCAGAATCCACAGTTTGCCACCTGTTAGAACTCCTGCAGCTTTTCTGTAGCTGTGAACCAGCCTTCCTGTAAAAGGATGTGAAACTACCACATATACTAGTGAGACTGCGCCCACTGATGTTTACAAGATTGAAAGAGTTTCTTCCAGCAAATCACGTAGAGAACATTTGGACAGTGGAAACATAATCAATGAAATATTCTTTCTGAGGAGCTGCATATCGTCGTAGTTTGCTTGCACATCAGTAACCTCTGCTGAAAGTGCTGTT
Seq C2 exon
ACCTGACATTTCAGTTTGTATTTGGGTCAGTCAGCTTTCATGGACTTTCATGGCCAAACAGAAGATTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013135_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.083 C2=NA
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=FE(37.0=100)
A:
PF0065217=Ricin_B_lectin=PD(30.3=73.5)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTCTCATATACAGCCAACAAAGA
R:
TTCTGTTTGGCCATGAAAGTCCA
Band lengths:
198-700
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]