GgaEX1025983 @ galGal4
Exon Skipping
Gene
ENSGALG00000012536 | GALNT13
Description
polypeptide N-acetylgalactosaminyltransferase 13 [Source:HGNC Symbol;Acc:HGNC:23242]
Coordinates
chr7:35157616-35166217:+
Coord C1 exon
chr7:35157616-35157864
Coord A exon
chr7:35158090-35158222
Coord C2 exon
chr7:35166117-35166217
Length
133 bp
Sequences
Splice sites
3' ss Seq
GCATGTTTTTTTTTTTTCAGCAA
3' ss Score
8.44
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
TGGGATGCACGCCTTTGCTTCCATGTTGGATTTTAGCTGTGGGAGTTTGGTGCATCTCAGCAGTGGCGTTCTTTCTTTAGCACTTTAGCTGGAAAGGAAGCAAAGCGATGAGGAGATTTGTTTACTGCAAGGTGGTGCTGGCCACTTCTCTCATGTGGGTGCTTGTGGACGTCTTCTTACTTCTGTACTTCAGTGAATGTAATAAATGCGATGACAAGAAAGAGAGGTCCCTGCTGCCTGCTCTGAGGG
Seq A exon
CAAAAGCAATATAAAATGTCTGGTACATAGAAGAGAAAAACCAAAATAATTATTGTTTGGTAATCCAGTATTTGAAGTCATTCTTATGATTAGAGAGGAAAGATTCTGCTTATGTAGAATGTGCATAGAAGAG
Seq C2 exon
GTGTGGAAGTTGTTCTGACACTACTTTGAAAAAGAGCTGTGAGCCACAAACGAGGCAGGGCAGATGCTCCATAGAAATGCTGTTCATCTGGTGTGTATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012536-'7-5,'7-4,8-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSGALT00000020475fB7782
Main Skipping Isoform:
ENSGALT00000020475fB7783
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGGCGTTCTTTCTTTAGC
R:
CGTTTGTGGCTCACAGCTCTT
Band lengths:
242-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]