GgaEX1026255 @ galGal4
Exon Skipping
Gene
ENSGALG00000027313 | GCK
Description
glucokinase (hexokinase 4) [Source:HGNC Symbol;Acc:HGNC:4195]
Coordinates
AADN03010888.1:4136-5836:+
Coord C1 exon
AADN03010888.1:4136-4509
Coord A exon
AADN03010888.1:4810-4840
Coord C2 exon
AADN03010888.1:5674-5836
Length
31 bp
Sequences
Splice sites
3' ss Seq
GCCCCCATGTTGGACCACAGGAG
3' ss Score
4.67
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGGTGCACGTGGGGCGGGGCCTTTCTGTGGGCGGGGCCTCCGCGTTGGGCGTGGCCTCCAGTGTGGGGCCGGCCCCATGGGGCAGCCTCACCCCACAGAATGGGCCCCCTATGGGGCAGCCCCCCGATGCGCCAAAACCCTCCCCTCACACAACCCCACAGCTTCACCCCGCCGTGGGGCAGGCGCCGTGCTATGGGGCCAGCGCCGTGGGGCCATCCTGGGGGGCTATGCCGGGTGGGCCCCATGTGGGGCTCCCCCCGGCGCTGTGGGGCCGACGGCCATCACGCTGTCACCTTTGTCACGGAGCTGCGGTCGCCCGTCTCCATGGGACCGCTGGAGAGCTGGCGGTGGTGACCAGGACACGGAGTGGTTG
Seq A exon
GAGCAGGATGGAGAGCTGGCGGCAGGAGAAG
Seq C2 exon
GTGGAGCAGATCCTGTCCGAGTTCCGTCTGAAGGAGGAGGACCTGCGGAAGGTGATGCACCGCATGCAGAAGGAGATGGACCGCGGGCTGAAGCTGGAGACGCACGAGGAGGCGTCGGTGAAAATGCTGCCCACCTACGTGCGCTCCACCCCCGAGGGGTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027313_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.552 A=0.273 C2=0.255
Domain overlap (PFAM):
C1:
NO
A:
PF0034916=Hexokinase_1=PU(2.4=45.5)
C2:
PF0034916=Hexokinase_1=FE(26.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACGCTGTCACCTTTGTCAC
R:
CTCCTTCAGACGGAACTCGGA
Band lengths:
128-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]