GgaEX1028723 @ galGal4
Exon Skipping
Gene
ENSGALG00000012739 | HIVEP1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4920]
Coordinates
chr2:62855396-62867972:-
Coord C1 exon
chr2:62867872-62867972
Coord A exon
chr2:62859603-62860265
Coord C2 exon
chr2:62855396-62855496
Length
663 bp
Sequences
Splice sites
3' ss Seq
TAGCTCGCTGTCTTTTATAGCTT
3' ss Score
7.06
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CTCCGCGAGCCGTACTCCGGCGTCGTGTGCCGAGGTCCCGCGCGGGACGGCTCCACCATGCATGGAGGGCATGACGGAGGGGGACGGCGGCGCCTGCTCCG
Seq A exon
CTTCCAGAAGAATGTTCCATCGAAACTTGATGACCTGCTGTAGGAGGAAGAAGGTGCACGAGTGAAAATGGAGGAGGTTCCTGTGAATGTCAAGGTCTCTTGCAAGCCTGGAGCTTGGCCTGCGTTCCTGTACGCACAGAGAGAAGCACTGCCAATAAGCTAATTTACACATTTCTGGGGGTACTGAGGGTCTTGGTTACACCACATTCAGAGCACTCCTGTAACTTTGCTTATAGACCTATGTATGAAACGAAGTTCCAACTGGAAGCAAACCATATTTTTTTAAAACATTAAAAAAAAAAAAAGTGCCTTGGAGTGCTTTGGGTGTGTTGGGTAATTGTGCACTCAATAAATGAAGTTACATAAGTGAAGACACTCCTGTAACCCTAGCCTGGCAGGAAGACGCAGCAGAAAACTCACTCATTGCCAAAGAACTCTGCTAGGCTGGAAAATGGGGAAGTTCTAATACTCGTGTTAACGTTTCGTCAGAGAGAGCTGTTGTCTTTGGCATCTGTGCTTGGTTTTGGAGGAGTCCCGGTTTTTTGCCTGGAGAGCTGCTCCTTCTTGCTGGACTTGTGAGTCTCTGTCTCCTTCCCCATCACAGAAGGGGAGAGGCGGGCATTTTCCACAGCTCAGCACCAGTCTCCTGCTGCCAGAATTCAG
Seq C2 exon
AGCAGAGTGCTTGCCCCGCTGTTTGAAGAAAACACAAAAAGGAACAGACGTCCTCCTGCAAGTAACGCACTAGAAACAACAGAAGCCTCTGGCCCACTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012739-'2-8,'2-7,3-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGCGAGCCGTACTCC
R:
AGAGGCTTCTGTTGTTTCTAGTGC
Band lengths:
191-854
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]