GgaEX1028724 @ galGal4
Exon Skipping
Gene
ENSGALG00000012739 | HIVEP1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4920]
Coordinates
chr2:62791177-62794996:-
Coord C1 exon
chr2:62793923-62794996
Coord A exon
chr2:62791840-62792090
Coord C2 exon
chr2:62791177-62791185
Length
251 bp
Sequences
Splice sites
3' ss Seq
TGAGCTTTATTAACTTTCAGAGC
3' ss Score
7.46
5' ss Seq
GTTGTGAGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
GCCTCCAGGTCCTGACTGCCAGCGCTACCCCCCAGGGCAAGCCCAGCCCTCAGGCGCACATCCCAGGCTTGCAGATACTGAACATTGCCTTGCCCACCCTCATCCCCTCCATCAGCCCGGTCAGCGCGGATGGGCAAGGAGCCTCTGAACCACCAGCTGCAGGCAGCAAAGCTGGTGACGTCCAGCAAGAGCCAGCTCCTGCCAGCTTCCCCGACGTCGGCCATGTGGCCAGGGCTGCTTCTCCTCAGGTGGTTGCCGGTGCCCAGCAGTACAGCGTGAAGAGCCTTGCGGAGCCTGCCCCTGTGAGTGACTATGAAAGACTCAATGGGCCGGGGAAAGGCGATGCTGAAAAGACTGACCTCACCAACCACAATAAGCCCAAGTGCGACGTCTCTTTGGTTCAGGTCAAAAGGGCTTCCCCGGTACAGCCCCGCTCGAAGGTGAATTCCGATGTTCTAACCAAGTCCCCGGTCCATCGAACTGTCTCTCCGGATAGACAG
Seq A exon
AGCACTTCAGGACCAGAAAATCATTTATATTACTGTGATCATCTGCCAGTTTTACTAATCCAGCTATTAGAAACGCACACGCTAGAAATGAGAAATTGCTCTCGGATCAGACGTGAACGTTCGTGACATTTCTGATTGTGTGGAGCCTCCACTGAGGGCTGAGCACCCAAACCACGAAGCACTCTCAACTCACATTGAAGTTAATGAGAGTTAAGAGTTCTCAGCACTCCGCAGCGTCGGACTTCAAAGTT
Seq C2 exon
GTGTTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012739-'25-33,'25-32,26-33
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.567 A=0.463 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000020790fB8236
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]