GgaEX1028726 @ galGal4
Exon Skipping
Gene
ENSGALG00000012739 | HIVEP1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4920]
Coordinates
chr2:62797765-62807274:-
Coord C1 exon
chr2:62807170-62807274
Coord A exon
chr2:62798381-62798756
Coord C2 exon
chr2:62797765-62798282
Length
376 bp
Sequences
Splice sites
3' ss Seq
TCCTGACTAACAGCCTCCAGTCT
3' ss Score
-3.65
5' ss Seq
ATGGCATGT
5' ss Score
0.6
Exon sequences
Seq C1 exon
GAAATTTGACAAAACATATGAAGTCAAAGGCACATAGCAAGAAGTGCATGGATTTGGGAGTCTCGGTAGGCTTAATAGATGACCAGGATGGAGAAGAAGAATTTG
Seq A exon
TCTTTCTGTTTGTATCTTTCAAAACCCTTTGCAGCAGTGATTCATATTGGGTACAAGGACACCCACTTATGAGTCAGAACCAGCTAGAGAGTATCCCACTGCGAAGGTTGGCAGACGAGCTTCGCATGTCGTCACTAGGAACTTAATGAAGCAGGAATCTGCTCACTTCTCCCCAAGCAAAAGAGAGAAGGGTGACTTTGAGCAAAAGGCTATAAATGGCTTAAAAGAACAACCAAATCCAGAAGGTGGAAAACAACAGGGAAGCGGGAGATAAAAGATTATGTAACTGCATAATTTAATATGTACACTGAAAAACAAAAGTGAAAATCTTCTTTGTTGCTTTGATGACATGGGAAGAAACTGAAAAATGCACATG
Seq C2 exon
GAGAGAAGCAAAGATTGGGCTGTGATCGGTCAGGGTTTGATGCGGAGGAATCTGACGGTGCAGATGAAGATGAAAATGACAACGAAGATGATGATGAAGACAGCCAAGCTGAGTCAGTCCTATCCACAACCCCCTCGGTGACAGCCAGCCCCCAGCATCACCCCTCTCGACATGGCCTGCAGGATGCCACAAGTGCTGATGAGGACAGCAGACTGCCGGACTGCTTTGGCGGGATTCACACGGACTCTATGGATGGTCTCCCAAAAGCGCTGCTCACAAAGATGACTGTCCTTAGTGCTGCGCAGTCGGTTAGCAGGACCTCCAGGTCACCAGCAGAGTTTACCCACCAGGAAGAAAATGAGGACAAAGCCCAGGAGAGGGGAGCTGGTCCCCACAGTGCAAGTAGTGCACTGGTAGACTCTGCTCCTGCATCTCCAGGTCGCCATATGTCCGTGGATTACCCCGATCCGGAAACAACTGTGGCCCACTCCTCCGTAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012739_MULTIEX1-2/6=C1-3
Average complexity
S
Mappability confidence:
83%=100=83%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.000 C2=0.988
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000020790fB8238
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGGATTTGGGAGTCTCGG
R:
TCATCTTTGTGAGCAGCGCTT
Band lengths:
345-721
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]