GgaEX1028743 @ galGal3
Exon Skipping
Gene
ENSGALG00000004222 | F1NEI1_CHICK
Description
NA
Coordinates
chr6:11999805-12002943:+
Coord C1 exon
chr6:11999805-11999904
Coord A exon
chr6:12000893-12001076
Coord C2 exon
chr6:12002788-12002943
Length
184 bp
Sequences
Splice sites
3' ss Seq
TCAATGTTTTCTCTCTTCAGGAA
3' ss Score
11.67
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GAGTTTGACTTGGATGTGGTAGCTGTAGTGAACGATACGGTGGGCACGATGATGACTTGTGCTTATGAAGACCCAAACTGTGAAATTGGACTCATTGTGG
Seq A exon
GAACTGGCAGCAATGCCTGTTACATGGAGGAGATGAGAAACATAGAGATGGTGGATGGTGAGCAAGGACGGATGTGTGTGAACATGGAGTGGGGAGCTTTCGGGGATAATGGATGCCTGGACGATATCAGGACAATATATGACAAAGCAGTTGATGACTATTCACTAAATGCTGGAAAGCAAAG
Seq C2 exon
GTATGAGAAGATGATCAGTGGGATGTACCTGGGGGAAATAGTCCGCAATATTTTGATTGACTTCACCAAACGAGGGTTCCTGTTCAGAGGACAGATCTCAGAGACTCTGAAAACCAGGCATATCTTTGAAACCAAGTTCCTTTCACAGATTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004222-'18-21,'18-20,20-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
A:
PF0372711=Hexokinase_2=FE(25.4=100)
C2:
PF0372711=Hexokinase_2=FE(21.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGACTTGGATGTGGTAGCTGT
R:
ACTTGGTTTCAAAGATATGCCTGGT
Band lengths:
234-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]