GgaEX1028755 @ galGal4
Exon Skipping
Gene
ENSGALG00000009754 | HK2
Description
Gallus gallus hexokinase 2 (HK2), mRNA. [Source:RefSeq mRNA;Acc:NM_204212]
Coordinates
JH376259.1:21-1326:+
Coord C1 exon
JH376259.1:21-265
Coord A exon
JH376259.1:373-448
Coord C2 exon
JH376259.1:1164-1326
Length
76 bp
Sequences
Splice sites
3' ss Seq
TCACAATCCCGGCCCCACAGCTG
3' ss Score
6.14
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GGTACGTGCCTGCAGACAGGTGAGCTGAGCCCCATGGGTGGGGTTTCCCTCTGAGTTGGCCGCTGCCCTTTAATTAGCGGTAAGGGAAGGTGATGGGGCCGGGGCACGGCCTGGCCGTCCGTCTGCACTGCCTCCCGTTGTCCGTCTGTCCGTCCGTCCGTCCGTCCGTCCGTCCCTGCCCCGCTCGGATGGGAGCCGGCAGTCGGCTCAGGTTCAGCTTCAAAGTGCTGCGATGCCGTTATGGG
Seq A exon
CTGGAATCCAACCCCAGGATCCGACTTTGGGATGGCAGAGGGCAAGCTGGGCTGTGCGGTGTTTGGGTGCATGCAG
Seq C2 exon
GTGGACAAATACCTGTACCACATGCGGCTCTCCGAGGACACACTGCAGGAGGTGTCCGAGCGCTTCCGCAAGGAGATGGAGAAGGGGCTGGGAGCCGACACCAACCCCACCGCCTCCGTCAAGATGCTGCCCTCCTTCGTCAGGTCCACCCCGGACGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009754_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.154 C2=0.273
Domain overlap (PFAM):
C1:
NO
A:
PF0034916=Hexokinase_1=PU(1.5=11.5)
C2:
PF0034916=Hexokinase_1=FE(26.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAGCTTCAAAGTGCTGCG
R:
GAAGGAGGGCAGCATCTTGAC
Band lengths:
172-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]