GgaEX1028765 @ galGal4
Exon Skipping
Gene
ENSGALG00000009754 | HK2
Description
Gallus gallus hexokinase 2 (HK2), mRNA. [Source:RefSeq mRNA;Acc:NM_204212]
Coordinates
JH376259.1:8480-10381:+
Coord C1 exon
JH376259.1:8480-8784
Coord A exon
JH376259.1:9051-9199
Coord C2 exon
JH376259.1:10198-10381
Length
149 bp
Sequences
Splice sites
3' ss Seq
AACCCTCTCCTGGCTTTTAGAAA
3' ss Score
8.26
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CTTTGCCCGACGCCTCCATAAGACAGTGAGGAAGCTGCTGCCCGACTGCGAGATCCGATTCGTGAGGTCGGAAGATGGCAGTGGCAAAGGGGCGGCCATGGTGACGGCGGTGGCCTACCGGCTGGCGGCCCAGCACAAGGCCCGGCAGAAGATCCTGGAGGCGCTGAAGCTGAGTCACGAGCAGCTCCTGGAGGTGAAGCGGAGGATGAGGGTTGAAATGGAGAAGGGGTTGGGCAAGGAGACGCACGCGGAGGCCACGGTGAAGATGCTGCCCACATACGTGTGCTCAACTCCAGATGGGACAG
Seq A exon
AAAAAGGAGATTTCCTCGCTCTGGACCTGGGGGGGACGAACTTCCGTGTGCTGCTGGTGCGGGTGCGGAACGGGATGCGGCGCGGCGTGGAGATGCACAACAAGATCTACTCCATCCCCCTGGAGGTGATGCAGGGGACAGGCGAGGAG
Seq C2 exon
GCACAGGCAGCAACGCCTGCTACATGGAGGAGATGCGGAACGTGGAGCTGGTGGAGGGCGACGAGGGCCGCATGTGTGTCAACATGGAGTGGGGTGCGTTTGGGGACAACGGCTGCTTGGATGACATCCAGACCGAGTTCGATTTGGCCGTAGATGAGCTGTCCCTCAACCCTGGGAAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009754_MULTIEX1-9/12=8-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=PD(16.7=38.8),PF0034916=Hexokinase_1=PU(29.1=58.3)
A:
PF0034916=Hexokinase_1=FE(23.8=100)
C2:
PF0372711=Hexokinase_2=FE(25.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGAGGATGAGGGTTGAAA
R:
TCGAACTCGGTCTGGATGTCA
Band lengths:
250-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]