GgaEX1028919 @ galGal4
Exon Skipping
Gene
ENSGALG00000009250 | HNRNPA3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
Coordinates
chr7:15326800-15330025:-
Coord C1 exon
chr7:15329954-15330025
Coord A exon
chr7:15328609-15328678
Coord C2 exon
chr7:15326800-15326874
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTGCATGCACCCTAGGCA
3' ss Score
8.47
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GTGGTTATGGATCTGGAAGTGGAAGTGGGGGCTATGGTGGTAGAAGATTCTAAAAATGCTACCAGAAAAAGG
Seq A exon
GCAATTTTCTGGACACATTCATCTGACTGGGAGCCAAGGGTAGCACAGGTGTAATCACTGACAGTCCCAG
Seq C2 exon
GTTGAATGAGAAGCTGCTGCTTGACAAAATGGGGAATGTCTTGCACATCCTCTTCAATTGAAGGTTTCTGACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009250_MULTIEX1-1/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.647 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTTATGGATCTGGAAGTGGA
R:
CCAGTCAGAAACCTTCAATTGAA
Band lengths:
147-217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]