GgaEX1030703 @ galGal4
Exon Skipping
Gene
ENSGALG00000009362 | ITGA6
Description
integrin alpha-6 precursor [Source:RefSeq peptide;Acc:NP_990620]
Coordinates
chr7:17235524-17252865:-
Coord C1 exon
chr7:17252825-17252865
Coord A exon
chr7:17237689-17237853
Coord C2 exon
chr7:17235524-17235651
Length
165 bp
Sequences
Splice sites
3' ss Seq
AAACTGTATGTTGTCCTCAGAAA
3' ss Score
7.28
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
NNGGCCATGCACCGGCAGCTGCAGCCGCAGGAGAAACGGCT
Seq A exon
AAAGTTCCAGGCTGTGAGTGAGGAAAGGAATTCACCGTGGAGTGAGAGGAATACTTGCAGGAACTTGGAGCTGTTGTGTTTCTGATGCTCTTGCCTCATCTGAACTGCAGCTGTCTTGCTGAAAGCAGCCAGGGAGTTCTGTGGACACTACTGAAGGAGGTTCAG
Seq C2 exon
GTTGCTGGTTGGAGCTCCTCGGGAAAAGGCCTTTCCATCCCAACAAGCCAACAGAACGGGAGGGCTGTACAGCTGTGACATCACATCTTCAGATACGCGCTGCACGCGTGTTGTGTTTGATGAAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009362_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.179 C2=0.364
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000038606fB8518
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]