GgaEX1031318 @ galGal4
Exon Skipping
Gene
ENSGALG00000001181 | KCNJ5
Description
potassium channel, inwardly rectifying subfamily J, member 5 [Source:HGNC Symbol;Acc:HGNC:6266]
Coordinates
chr24:1073171-1099930:+
Coord C1 exon
chr24:1073171-1073284
Coord A exon
chr24:1092017-1092187
Coord C2 exon
chr24:1098984-1099930
Length
171 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGCCATGCCGGGCAGAGG
3' ss Score
4.53
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CTTTGTGCAAAAGCCCTGAGGGCTGAGAGGCAGCTGACAGCCTTACCCAAGGCCAAGACCACCTGGGAACAACACCGCGATGGTTCTGACCCTGGTTGGACATCTAATCTCAAG
Seq A exon
AGGGAGGGAAGGAGGAGACGGCCCCGGGATCAGAAGACCACCACGGCTTGCTGGTGATGGCATGGATCGGCCGCTTCTCCAGCAGCTGCGCTCCCCGCCTCTCGGTGCGGTCACCGCCCGGCATCCCCGAAGTGCCACGGCACGAGACTGATGCAGAACCGCTCTCAGCAA
Seq C2 exon
CCCAGCCATGGCCAGAGATTCTAGGATCTTCATGAACCAGGACATGGACATCGGAGTTGCATCCAGAGAGCCTAAGAAGATTCCCAAACAGGCTCGGGATGACGTCCCCATTGCCACTGACCGAACCCGACTCATAACAGCAGAAGGTAAGAAGCCACGGCAGCGGTACATGGAGAAAAGTGGCAAGTGCAATGTGCACCATGGGAACGTTCAGGAAACCTACCGATACCTTAGTGACCTCTTCACTACACTGGTGGACCTCAAATGGCGTTTTAATCTTCTTGTCTTCACTATGGTCTATACCATCACTTGGTTGTTTTTTGGGTTCATATGGTGGCTCATTGCCTATATCCGGGGAGACCTGGACCACCTTGAAGATGAAAACTGGATCCCTTGTGTTGAAAATCTCAGTGGATTTGTTTCTGCGTTTCTCTTTTCTATTGAAACTGAGACAACAATTGGGTATGGCTACAGGGTTATAACTGAGAAGTGCCCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001181_MULTIEX1-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.013
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0100715=IRK=PU(97.0=84.6),PF058997=Cupin_3=PU(59.3=10.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTTCTGACCCTGGTTGGA
R:
AACGTTCCCATGGTGCACATT
Band lengths:
246-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]