GgaEX1031357 @ galGal4
Exon Skipping
Gene
ENSGALG00000002451 | KCNT2
Description
potassium channel, sodium activated subfamily T, member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr8:2753529-2757928:+
Coord C1 exon
chr8:2753529-2753592
Coord A exon
chr8:2756304-2756442
Coord C2 exon
chr8:2757820-2757928
Length
139 bp
Sequences
Splice sites
3' ss Seq
TTTCACCTTCCAAAAAATAGTTA
3' ss Score
2.7
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AATGGATGATGCTGAAGCTTGTTTCATTCTAAGTAGCCGCTGTGAGGTGGACAGAACAGCAGCT
Seq A exon
TTATGCCTTATAGAGAAAATATTCCTAAAAATATTTCAAAGAGGATATATGAATAACAATGAGAAGAAGAGAGGATGAGTAAACATAGCTTGAAGCACACAACTGAATGTATTTGGTGGTGCAGCTTTAGTTTATCACA
Seq C2 exon
GATCATCAAACCATTTTAAGAGCATGGGCTGTTAAAGACTTTGCCCCAAATTGTCCTTTGTATGTCCAAATACTGAAACCTGAGAATAAATTCCACATCAAGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002451_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.120 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0349313=BK_channel_a=PU(8.0=27.0)
Main Inclusion Isoform:
ENSGALT00000003864fB8638
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGATGCTGAAGCTTGTT
R:
TGCAAACTTGATGTGGAATTTATTCT
Band lengths:
170-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]