GgaEX1032724 @ galGal4
Exon Skipping
Gene
ENSGALG00000012418 | KYNU
Description
kynureninase [Source:HGNC Symbol;Acc:HGNC:6469]
Coordinates
chr7:32168612-32175285:+
Coord C1 exon
chr7:32168612-32168758
Coord A exon
chr7:32174603-32174704
Coord C2 exon
chr7:32175187-32175285
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCCTTGCTTGCGTAGTGC
3' ss Score
8.39
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GGGGAGGAGACCTTGAGGATTGAAGATATTCTTGCTGTGATTGAGGAGGAAGGGGACTCTATTGCTGTCATTCTGTTCAGTGGGGTGCAGTACTACACGGGCCAGCTGTTTGACATCCCTAGAATAACAAAAGCTGGCCAAAAAAAG
Seq A exon
TGCCCCACACAGGTTTTGGTTGTTAAAGTACATCACTTCTAATGGAGAAATGACAAGGTATTGGTTGTTAAAGTACATCACTTCTAATGGAGAAATGACAAG
Seq C2 exon
GGTTGCTTTGTTGGATTTGACCTGGCTCATGCTGTTGGGAACGTAGAGCTCTGTTTGCATGACTGGGGAGTGGATTTTGCATGCTGGTGCACCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012418_MULTIEX2-7/13=5-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=FE(14.5=100)
A:
PF0026614=Aminotran_5=PD(3.8=50.0)
C2:
PF0026614=Aminotran_5=FE(19.2=100)
Main Inclusion Isoform:
ENSGALT00000020299fB8856
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAGGAGACCTTGAGGATT
R:
GCACCAGCATGCAAAATCCAC
Band lengths:
237-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]