GgaEX1032792 @ galGal4
Exon Skipping
Gene
ENSGALG00000015056 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr2:102780728-102785916:+
Coord C1 exon
chr2:102780728-102781006
Coord A exon
chr2:102783097-102783255
Coord C2 exon
chr2:102785764-102785916
Length
159 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTCTCCTCCATGCAGGAG
3' ss Score
11.48
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
ATGGCTGCGGCGCCGGTTCGCTTTGCCCACGGTACCCCAGCACCGGGCTGCCGGCTCCTGTGGGCTCTGCTCCCGCCGCTCTTCTCCCTGTGCCCTGCGCAGACGGAGCCCCCCGGCTCCCTCGGACTCAGCCTCCACCCGCCGTACTTCAACCTGGCCGAGACGGCCGGCATCTCGGCGACCGCTACCTGTGGGGAGGAGGAGGGCGGCGGGCGGCCGGAGCTGTACTGCAAGCTGGTGGGGGGGCCGGCCGCAGCCCCGCTGGGGAGAGCCATACAG
Seq A exon
GAGAACTGAGGGGAAGAGGGTAACAAGGTCACCAGCAGATGTACACCTGCCTGGCTGGTGAATTGCAGCCAAATTCAAGCAGTGGCTGGGTGCCCAGGCTCCAGGCTGCTGGATCAAGATGTGTCCTGTGGCAGGCGGGCTGGGGGAGCGTGTCTGCAG
Seq C2 exon
GGACAGTTCTGTGACTACTGCAATGCTGGTGATCCCAGTAAAGCTCACCCAATCACTAACGCCATTGATGGAACGGAGCGCTGGTGGCAAAGTCCTCCTCTTTCTAAGGGCTTAAAGTACAATGAAGTCAATGTCACTTTAGATCTGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCGCCGTACTTCAACC
R:
AAGAGGAGGACTTTGCCACCA
Band lengths:
246-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]