GgaEX1032801 @ galGal4
Exon Skipping
Gene
ENSGALG00000015056 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr2:102855495-102859423:+
Coord C1 exon
chr2:102855495-102855725
Coord A exon
chr2:102856766-102857181
Coord C2 exon
chr2:102859310-102859423
Length
416 bp
Sequences
Splice sites
3' ss Seq
GCTCTGTCTGACTGCATTAGGTG
3' ss Score
5.69
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GGAAACTTCAGACATGCCAGCAGCAATAACCGTGTATCCAGAGAAGAACTGATGGTAATCCTGTCTAGACTGGATGCTTTACACATCAGAGGCCTTTACTTCACTGAGACTCAGCGATTAACCCTTGGTGAGGTTGGGCTGGAAGAAACGACCAGCACAGGAAGTGGCAGCATTGCATACAATGTAGAAACATGCTCCTGCCCTCCAGAGTACGCCGGTGACTCATGTCAG
Seq A exon
GTGGAGAGAAGGTGATGCCTGCCACACCCTGAGCTAGGTATATATTGAGCTGCAGGAACTGCGGAGTTATTTGTTAACTTCAGGAACTGCAATGTGTGCCGTACTACTTGACTCACGTATAAAGTTTAAAGGTGGGGCCCATCTCAGCATATAGCCTCATTAATCTGAGTCAGAAGCTGGGGAGTAAGGGAGAGTATAAGGGAATGTGTGAATACTGAAAGAATACTGCATGTTAACAGTCGAGCTGAAGTAAAATGATGGCCCAAGTAGAGGGGCTGAAGAACATAGGCTGGCAAGTTGTTGCTTTAGTAGCCATGGGATGTTTAACACAAGCTATGCAGCAGAGGTTACTGTTTCCTCATCTTCAGGATAGAAGTCAACAGCAACAAGTTCAAAGGGATTTTTACCTGAGACAG
Seq C2 exon
GACTGTGGCCTTGGATTTTATCGTGAGAGTAAAGGATTATTTAGTGGACGCTGTGTCCCCTGCAACTGCAACGGAAATTCAAATAGGTGCCACGACGGTACTGGGAAATGTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056-'45-53,'45-52,46-53
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.250 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(48.6=30.0)
A:
NO
C2:
PF0005319=Laminin_EGF=PD(45.9=44.7),PF0005319=Laminin_EGF=PU(37.8=44.7)
Main Inclusion Isoform:
ENSGALT00000024287fB8871
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACTTCAGACATGCCAGC
R:
ACATTTCCCAGTACCGTCGTG
Band lengths:
342-758
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]