GgaEX1033580 @ galGal4
Exon Skipping
Gene
ENSGALG00000028582 | LMO2
Description
Gallus gallus LIM domain only 2 (rhombotin-like 1) (LMO2), mRNA. [Source:RefSeq mRNA;Acc:NM_204271]
Coordinates
chr5:17717401-17719424:-
Coord C1 exon
chr5:17718167-17719424
Coord A exon
chr5:17717659-17717770
Coord C2 exon
chr5:17717401-17717578
Length
112 bp
Sequences
Splice sites
3' ss Seq
GCAGCGGTGGCGGCGGGCAGGCA
3' ss Score
-1.78
5' ss Seq
GAGGTTAGA
5' ss Score
4.15
Exon sequences
Seq C1 exon
AATTTGTTATAGTGCTTACCGAGAACTCGGGGGCATCTGGAAACAGACGCCAGTGACCGGCGACTCTGGGACGCGACGGGATACAAGGGAAGCACAGTTTAGTTGACCGATTCGCTCTCTAGGTAGAAAACAGCGCTCGAGTTCTGACCCGGCGCCTGATCTCCGGGTGCCGTGGCGAAACGTGCGTGCTGTGGGCATGTGCGTGTGCAGGGGCTGGGCAGGACGAGGCGAGGGAGCGTGACCCGCTGTGATTCCGCGTGGGGCCGGGGTGCCGACAGCTCGGAGCCGGCCGAGGTTTCCCTCAGCCCTCGGGATGCTTTCGGGTCGCGCATCTCCCCGGGAGCCCCGCGCAAGCGGTGCGGTGCTGCTCCGTGACGTCGCGATGTGAAAACGCAGCGTCAGCTCGCAGCCGCGGCTGCGGGGAGCCCGAGCTCTGTCTCTTTAAGAAGCCGAGCGAGTCGTGATGCCGCTGTTTGTGTTGCTAAACCCCCAGGAGTCCA
Seq A exon
GCAGCGGTGGCCGCGGTAGTCGCGGTAGTCGCCTCCCGAACACCCGCAGAGCCGCAGCCGGAGGAGCGGCCCCGCCGCCCGGCGCGCGGGAGGAGCGCGGCGAGGATGGGAG
Seq C2 exon
GAGGAAATCCTGTGAATGTCATTGGGGGGCGGAGGGGGAGCGCGGCTGGTGACAAGGCGTCGAGAGCGGACGGCCTCTGCGGGGGCAGCGGGGGCAGATCGCACCACAGGCACGCTACAAAGGAGCCATCCCTGCCAATGTCATCGGCCATCGAGAGGAAGAGCCTCGATCCTTCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028582_CASSETTE2
Average complexity
S
Mappability confidence:
100%=50=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.683
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGAAAACGCAGCGTCAG
R:
CAGGGATGGCTCCTTTGTAGC
Band lengths:
253-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]