GgaEX1033678 @ galGal4
Exon Skipping
Gene
ENSGALG00000013254 | LOXL3
Description
lysyl oxidase-like 3 [Source:HGNC Symbol;Acc:HGNC:13869]
Coordinates
JH375171.1:161827-163328:+
Coord C1 exon
JH375171.1:161827-161981
Coord A exon
JH375171.1:162526-162699
Coord C2 exon
JH375171.1:163166-163328
Length
174 bp
Sequences
Splice sites
3' ss Seq
GCCGCTGCGTCTCTCCGCAGATT
3' ss Score
11.98
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GGATGGGGCCCATCCACCTGAATGAGGTGCAGTGCCTGGGCACTGAGAAGTCCCTCTGGAGCTGCCCGTTCAAGAACATCACGCAGGAGGACTGCAAGCACACAGAGGACGCGGCCGTGCGCTGCAACATCCCCTACATGGGCTACGAGAACCTG
Seq A exon
ATTCGGCTGAGCGGGGGCCGCAGCCGCTTCGAGGGGCGCGTGGAGGTGGCGGTGGGGGCTGCAGAAGGGGACGAGCCGCGCTGGGGCCTGGTGTGCGGCGAAGGCTGGGGTACGCTGGAGGCGATGGTCGCCTGTCGCCAGCTGGGGCTGGGATTCGCTAACCACGGCTTACAA
Seq C2 exon
GAGACGTGGTACTGGGATGCCAGCAACGTGACAGAAATGGTGCTGAGTGGTGTGAAGTGCGCTGGCCATGAGCTGTCCCTGAGCCACTGCCAGCACCACGGCAGCAGCCTGAACTGCAGGAACACGGGAACGCGCTTCGCTGCCGGTGTCATCTGCTCTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013254_MULTIEX2-1/2=C1-C2
Average complexity
ME(1-2[99=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(42.9=80.8)
A:
PF0053013=SRCR=PU(96.4=93.1)
C2:
PF0053013=SRCR=PD(51.0=94.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACATCACGCAGGAGGACT
R:
TTTCAGAGCAGATGACACCGG
Band lengths:
246-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]