GgaEX1033681 @ galGal4
Exon Skipping
Gene
ENSGALG00000013254 | LOXL3
Description
lysyl oxidase-like 3 [Source:HGNC Symbol;Acc:HGNC:13869]
Coordinates
JH375171.1:158039-161112:+
Coord C1 exon
JH375171.1:158039-158250
Coord A exon
JH375171.1:160636-160695
Coord C2 exon
JH375171.1:160893-161112
Length
60 bp
Sequences
Splice sites
3' ss Seq
GGTTGTTTTCTGTTTTCCAGGCT
3' ss Score
8.65
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
ACGGAGCAGAGCCACGTGGAGGAGGTCCGTCTGCGCGCGGTGGTGTCGGGGGCACAGCGGCGGCTGCCAGTGACAGAGGGCATCGTGGAGGTGCGCTACAAGGATGGCTGGGCACAGATCTGCGATGAGGGCTGGGACAGCAAGAACAGCCACGTCATCTGCGGCATGATGGGCTTCCCCACTGAGAAGAAGGTGAACAGGAACTTCTACAA
Seq A exon
GCTGGCCTCCAAATCTCAGCCTAAACAAAAGCGCAGGGAGGACGTAGGGTCCAGGAAGAG
Seq C2 exon
GCTGTTTGCGGAGCGGCAGCAGCTCAACTACCGCCTGCACTCAGTGTCCTGCACAGGGACAGAGGTGCACATCTCCATGTGCACGTTCCAGTTCTACCGGGGCAACTCCTCAGCAGCCTGCAGCACTGGCATGCCCGCTGTTGTCAGCTGCCTGCCCGGGCCCCTCTTTGCTACCAGCAGCACCCAGAAGAAGAAGCAGCGCCAGCAGCAGCAGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013254_MULTIEX3-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.952 C2=0.203
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(35.7=70.4)
A:
PF0053013=SRCR=FE(14.3=100)
C2:
PF0053013=SRCR=PD(36.4=68.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACAGCCACGTCATCTGC
R:
GAGATGTGCACCTCTGTCCCT
Band lengths:
146-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]