GgaEX1033875 @ galGal4
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31373728-31377849:-
Coord C1 exon
chr7:31377688-31377849
Coord A exon
chr7:31377495-31377591
Coord C2 exon
chr7:31373728-31373902
Length
97 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTTCGTATTGCACAGATT
3' ss Score
7.96
5' ss Seq
TATGTAAGA
5' ss Score
3.54
Exon sequences
Seq C1 exon
GGAGGCCCACCTGCAATTGTGCGCTGGGTTTTACAGGACCAAACTGCAATCAGACAGTCTGCCATCGTTTTTGCCAAAATGGAGGAACCTGCAGTGTCACTGCTGGAAATCAGCCCTTTTGCAGCTGCTTGCCTGAGTATACAGGAGACAGATGTCAGTACT
Seq A exon
ATTGATAAATTTAACTCCAGAATTATTCTTCTGAGAAAATGGATCTTATATATTCAAGGGATCTTTGAACACACTTGCAATATCCTTCTAGACATAT
Seq C2 exon
ATGTTTGCCACCATTATTGTGTGAATTCTGAATCATGTACTATTTCTGATGATGGAAGCGTAGAATGTGTCTGTCCAGTACGATTTGAAGGTCCAAAATGTGAAGTGGACAAGTGTATAAGATGTCACGGGGGACACTGTATAATAAACAAGGACACTAATGACATAGTATGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'108-132,'108-131,109-132
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000020272fB9034
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGCTTGCCTGAGTATA
R:
AGTGTCCCCCGTGACATCTTA
Band lengths:
180-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]