GgaEX1034378 @ galGal4
Exon Skipping
Gene
ENSGALG00000010258 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr5:37223036-37224258:-
Coord C1 exon
chr5:37224219-37224258
Coord A exon
chr5:37223876-37223971
Coord C2 exon
chr5:37223036-37223161
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCCTGCTCGCTCCCCTCAGTGG
3' ss Score
8.64
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GATGCTGCTGATATCACCCCAGAGCCTGAGGCGCACAGAG
Seq A exon
TGGAGGAAGAAGAGACCCGGCGTGCTCCTCCCCAGCCTGGCCCTACCACCACCTGGGCTGATGCTGCTCCAACGCAGATACCCGCGCAGGGCTCAG
Seq C2 exon
AGGCCAGCGGCTGTGCTTCTTCATCCCTTGCCTGTGGAGCTGGTGTGTGTGTGCTCACCCCAGATGGATACAGCTGCTCATGCCACCTGGGCTATACGCTGCACCCCAGTCGTCTGCACTGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010258_MULTIEX3-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=86.0),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCTGATATCACCCCAGA
R:
CAACACAGTGCAGACGACTGG
Band lengths:
164-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]