GgaEX1035814 @ galGal4
Exon Skipping
Gene
ENSGALG00000003683 | MED27
Description
mediator of RNA polymerase II transcription subunit 27 [Source:RefSeq peptide;Acc:NP_001264204]
Coordinates
chr17:6354719-6356382:-
Coord C1 exon
chr17:6356338-6356382
Coord A exon
chr17:6356099-6356170
Coord C2 exon
chr17:6354719-6355242
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTGCTGTGTGTAATTGCAGTGT
3' ss Score
5.92
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CCTGGCAGCAATGTGAGATATGAACACAGAACGCAGGGGAAAGAA
Seq A exon
TGTGAGATGGAAGCAGTTCTCTCAGTAGGGATTTATCCAAGAAAACTGCTGCTCTTACTGAGGTAGAAAAAA
Seq C2 exon
CACTTCATCCAGTTAAGATGAACACATGCGAGAACAATCATCATCTTCCTGCTGACATCGGCAGATAAATCCACTCCCAGAGAAATCAGTCACCCTGCGTCTTCATTGATTTGTTGTATATTTTTCCTTTTTAATTTCTGCTAACGACTGCTGCCTCCCACCTTGTTTCAACATGAGTAACTGGTGCTGACTAAGAGAATAAAGAGCACTTTTGTGCTTTTGGGGATGGGTGAAAACTGCAATATTTGTACAACAGAACGCAAAGCCAAAACCCTTATTAGATGTTTTAACAGGATTGAAGTCTAAGTTCATCTTTGAATGTTCAATTGATTTTTAGATTAAAACATCTTCATTATTGTTTTTTTGTCAATACTGTAATTTAGGTTTATTTCTGCTGTTATACTGTGACAGACCAAGATGCTGCTTTTATTCCTTGCCCTTTGCTATTACAACAAAAGAAAATTAAACCTTCAAGATGTAAGATTTTTACTATTGTAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003683-'14-21,'14-20,15-21
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACACAGAACGCAGGGGAAA
R:
GGCAGCAGTCGTTAGCAGAAA
Band lengths:
179-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]