GgaEX1035878 @ galGal4
Exon Skipping
Gene
ENSGALG00000001040 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr21:1017787-1018693:+
Coord C1 exon
chr21:1017787-1017915
Coord A exon
chr21:1018198-1018236
Coord C2 exon
chr21:1018565-1018693
Length
39 bp
Sequences
Splice sites
3' ss Seq
TGGAGCTCTTCTTTCTGTAGGAA
3' ss Score
8.81
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CCTGCCCGCCTGGAACCTTCGGCAAGAACTGCAGCCAGCTCTGCCTCTGCCAGAATGGGGGTACCTGTGAGCCCGCCACCGGCACCTGCCGCTGCCCCCCTGGCGTGGCTGGGATCCACTGTGAGGATG
Seq A exon
GAAGGAGGTGGTTGAAGGGTGCGAAGAGAAAACAGGAAG
Seq C2 exon
GGTGCCCGAAAGGGTTTTTTGGAAAGCAATGCAGGAAGAAATGCAACTGTGCCAACCGAGGTCGCTGCCATCGGATCTACGGAGCGTGTCTGTGCGATCCTGGCCTGTACGGCCGGTACTGCCACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(63.0=65.9)
A:
PF0005319=Laminin_EGF=FE(29.5=100)
C2:
PF0005319=Laminin_EGF=PD(34.8=36.4)
Main Inclusion Isoform:
ENSGALT00000001544fB9356
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGATCCACTGTGAGGATG
R:
CACAGACACGCTCCGTAGATC
Band lengths:
115-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]