GgaEX1038116 @ galGal4
Exon Skipping
Gene
ENSGALG00000007647 | MYO3A
Description
myosin IIIA [Source:HGNC Symbol;Acc:HGNC:7601]
Coordinates
chr2:16188771-16195116:-
Coord C1 exon
chr2:16194978-16195116
Coord A exon
chr2:16190239-16190434
Coord C2 exon
chr2:16188771-16188880
Length
196 bp
Sequences
Splice sites
3' ss Seq
GTACTGCTTTTTTTTTTAAGGTA
3' ss Score
9.97
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
ATATCAAAATTATCTGAAGACTACTTAGCATTGCAGCAAAAATTAAATGAAATGATACTGTCGCATCAGCTGAGACCTGTGATGATGTCCAAAGATAAGCAAACTAACAACCAACATTCTTCTCATGTTTGTCAGTCAG
Seq A exon
GTACTGTTTCCAGTTTAAGCTCCTGTTGGGTTTAAAAATACAGTAGGGAAGGTTTCCTTCTACTGTCCCAAAGGGAAACTCAGATAACTCCAGGAGGCCCATGTGAAGTGTAGTAGAGTAACAGCAACCCATGTGGAGCACAGTCAGGCCTTCCATACCATTTCAAATAAAGGAATGTAATTTATATTTCATACAG
Seq C2 exon
TTGCAGCCAAAGTAGAAGACACTCGCCCACTGCAAAGACCCCCAAGGAGGCCACGGAAGCCCAAGACATTAAATAACCCTGAAGATTCCACCTACTACACTCTAATACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007647-'34-36,'34-35,35-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.596 A=0.000 C2=0.919
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000012375fB9708
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGACTACTTAGCATTGCAGCA
R:
TGTATTAGAGTGTAGTAGGTGGAATC
Band lengths:
234-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]