GgaEX1038117 @ galGal4
Exon Skipping
Gene
ENSGALG00000007647 | MYO3A
Description
myosin IIIA [Source:HGNC Symbol;Acc:HGNC:7601]
Coordinates
chr2:16186482-16188880:-
Coord C1 exon
chr2:16188771-16188880
Coord A exon
chr2:16186972-16187076
Coord C2 exon
chr2:16186482-16186522
Length
105 bp
Sequences
Splice sites
3' ss Seq
GGTCCCTCCTACAAAAGCAGGTA
3' ss Score
2.77
5' ss Seq
ATGGTAGGC
5' ss Score
7.42
Exon sequences
Seq C1 exon
TTGCAGCCAAAGTAGAAGACACTCGCCCACTGCAAAGACCCCCAAGGAGGCCACGGAAGCCCAAGACATTAAATAACCCTGAAGATTCCACCTACTACACTCTAATACAT
Seq A exon
GTATTTCTCTCACATCACACCACAGATGTGAGACAAGTTCCATTTCGACTCATCTCCTTGCACATCAGATGCAGTAAAGTGGTTCACTTTAAGTGAAACCTGATG
Seq C2 exon
AAATCAATACAAGATGAAAAACGGAAACCAAGAAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007647_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.919 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000012375fB9709
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCCAAAGTAGAAGACACT
R:
TCTTTTCTTGGTTTCCGTTTTTCA
Band lengths:
147-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]