GgaEX1038120 @ galGal4
Exon Skipping
Gene
ENSGALG00000009602 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr7:17876874-17884738:-
Coord C1 exon
chr7:17884583-17884738
Coord A exon
chr7:17882755-17882830
Coord C2 exon
chr7:17876874-17876966
Length
76 bp
Sequences
Splice sites
3' ss Seq
TGGATCCTCTTGTGTTTCAGGTT
3' ss Score
10.86
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GTGTCTTATCAAGGATTTCGAGAAACGTCCTACAGTCACCCACCTTTTGGAGCATCCATTTATTAAACAAGTGCATGGTAAAGATATGTCCCTGCAAAAACAGCTGGCTGAGCTTATCCAAGAACAGCAGCGACTAGGCTCTGTAGCAAAAACAAG
Seq A exon
GTTTTCATTGCCCCTTGCTCTGCCCCTGGGCACCACTGAAAAGTCTGGCTCCATCTTCTTTCTACCCTCCCTTCAG
Seq C2 exon
GATTCAATCCAAACCTAGTAAAGCTGGCAGCTGGTTCCGTGTTTAAAAATGTGGAAATATAAATTTCAGCATTTCAGAGGCCTTTTAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009602-'21-19,'21-18,22-19
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.063 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(7.9=39.6)
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSGALT00000015648fB9711
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCTACAGTCACCCACCTT
R:
TTAAACACGGAACCAGCTGCC
Band lengths:
177-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]