GgaEX1038129 @ galGal4
Exon Skipping
Gene
ENSGALG00000009602 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr7:17918806-17931770:-
Coord C1 exon
chr7:17931694-17931770
Coord A exon
chr7:17924979-17925104
Coord C2 exon
chr7:17918806-17918951
Length
126 bp
Sequences
Splice sites
3' ss Seq
CCCACTTTTTTAATTTTCAGGCT
3' ss Score
9.96
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTGTTTCAGCCCAGCTCACCAGCACACGGCTTCGTAGAAACACCTCAGTAGGAACACCCTTTTGGATGGCTCCTGAG
Seq A exon
GCTACTTGTATAATGAGCAAGGAGTTATGCTGAAGCTGCTTAAAGCCTGTAAGGAAAGCAATAGAATTCAGACAGCTACATTTTGAAATACAAAGAGGTTTCCTTAAAGATAATGGCATATGAGAG
Seq C2 exon
GTCATTGCTTGTGAACAGCAATATGACTACTCATATGATGCTCGATGTGACGTATGGTCTTTGGGAATAACAGCTATTGAACTCGGGGATGGAGACCCTCCTTTATTTGACATGCATCCGGTGAAAACTCTTTTTAAAATTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009602_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.7=100)
A:
PF0006920=Pkinase=PD(3.8=63.6)
C2:
PF0006920=Pkinase=FE(18.0=100)
Main Inclusion Isoform:
ENSGALT00000015648fB9716
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCAGCCCAGCTCACCAG
R:
GGAATTTTAAAAAGAGTTTTCACCGG
Band lengths:
218-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]