GgaEX1038166 @ galGal4
Exon Skipping
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192375824-192377288:-
Coord C1 exon
chr1:192377199-192377288
Coord A exon
chr1:192377031-192377112
Coord C2 exon
chr1:192375824-192375951
Length
82 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCTGCTTTTCCCTAGACA
3' ss Score
10.86
5' ss Seq
AAGGTTGGC
5' ss Score
6.1
Exon sequences
Seq C1 exon
AGTACTCACATTGACGGGCACAAGAAGAACAGTGTGCGGCACAAACTGGTCTCCTTAACACTCAAGAAGAAATCCAAACTGACAGAGGAG
Seq A exon
ACAACATAGAACCAGCCCTCCTCTGGGTTTGGCGCTACCTGTCTCTCTGCCTGAAAGATTTAAGGAGTGTTTAAGGGGAAAG
Seq C2 exon
GTAACAAAGAGACTTCATGACGGGGAGTCAACACTCCAAGGTAATAGCATGCTTGAAGACCGGCCCACCTCCAACCTGGAGAAGCTCCATTTCATTATTGGTAATGGCATCCTCAGGCCAGCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733-'35-37,'35-36,36-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=1.000 C2=0.465
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0078412=MyTH4=PU(18.9=46.5)
Main Inclusion Isoform:
ENSGALT00000001046fB9724
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCACAAACTGGTCTCCTTA
R:
CTGGCCTGAGGATGCCATTAC
Band lengths:
175-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]