GgaEX1040608 @ galGal4
Exon Skipping
Gene
ENSGALG00000001896 | NTNG1
Description
netrin G1 [Source:HGNC Symbol;Acc:HGNC:23319]
Coordinates
chr8:822750-881019:+
Coord C1 exon
chr8:822750-823457
Coord A exon
chr8:824113-824155
Coord C2 exon
chr8:880379-881019
Length
43 bp
Sequences
Splice sites
3' ss Seq
AGAAATGCTCCTTCCTTTAGATG
3' ss Score
7.5
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GAAGCCCTGACAAATAAATTATAAGACAAAGGACAAGCTCTACGTTGCTGTGAAAGGCTGTCACTGGGGTCTGTGTGGCTTCTACCAAAGTCTTCAACGTAATAAAGCAAACGCTGTATCCTAATGCCTCACGTTTGAGTTGGAACCTATTTTATGAAATATATACATGCATATGTACATATATGTATAATCTATAGACTGAACGTACGTCAGTACTGAGCATCCTCACGAAGGTGATCTAAAAGGATTTAGAAATGTATTTGTCGAGATTTCTGTCACTTCACGCCCTCTGGGTCACCGTCTCTTCCATGATGCAGCATTATCCTTCCGTGTGGGGACATTACGATGTGTGTAAGACTCAGATTTACACAGAAGAAGGAAAAGTATGGGATTACATGGCCTGCCAGCCAGAAGCCAGAGACATGATCAAATACGTAAGAGTGACTCTGGATCCCCCAGATATAACGTGTGGAGATCCTCCTGAGACTTTCTGTGCAATG
Seq A exon
ATGGTCCTAAAATTAGAGACTGGTTTTGGAAACGTTGGGCTTG
Seq C2 exon
GGAAACCCCTACATGTGCAATAATGAATGTGATGCAAGTACCCAAGAACTGGCTCACCCTCCGGAACTGATGTTTGATCTTGAAGGAAGACATCCATCCACATTTTGGCAGTCCACAACATGGAAGGATTATCCAAAGCCTCTTCATGTCAATATTACACTCTCCTGGAACAAAACCATTGAGCTGACAGATAACATAGTTATCACTTTTGAATCTGGCCGTCCAGACCAAATGATCCTGGAGAAATCCCTCGACTATGGACGAACATGGCAGCCCTACCAATATTATGCCACAGACTGTTTAGATGCTTTCCACATGGATCCAAAATCAGTGAAGGATTTATCACAGCATACAGTCCTAGAAATCATTTGCACGGAAGAATACTCTACTGGATATATGACAAACAGTAAAATAATCCACTTTGAAATCAAAGATAGATTTGCTTTTTTTGCTGGACCTCGGCTTCATAATATGGCTTCTCTTTATGGCCAGCTTGACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001896_MULTIEX1-1/10=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PU(13.0=39.0)
A:
NO
C2:
PF0005512=Laminin_N=PD(86.2=99.1)
Main Inclusion Isoform:
ENSGALT00000002932fB10072
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCAGAAGCCAGAGACATG
R:
CCAGTTCTTGGGTACTTGCATCA
Band lengths:
148-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]