GgaEX1041153 @ galGal4
Exon Skipping
Gene
ENSGALG00000006804 | ODF2L
Description
outer dense fiber of sperm tails 2-like [Source:HGNC Symbol;Acc:HGNC:29225]
Coordinates
chr8:14951321-14952372:+
Coord C1 exon
chr8:14951321-14951373
Coord A exon
chr8:14951650-14951736
Coord C2 exon
chr8:14952184-14952372
Length
87 bp
Sequences
Splice sites
3' ss Seq
TACTTGCTGATCACATACAGAAT
3' ss Score
3.15
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AATGAAAAGCACCATGAGGTATGCTTGAAGGAGCTGGAAAACAGCCTACAAAG
Seq A exon
AATATTTACCTGATACTACTGACGGAAATAATTGTATTATTCGTGGAAGTGAATAAAGTAGAAAGGCAGACTGCATGATAGTGAAAG
Seq C2 exon
ACCTGCCTGGATGCCTACCCGTGTGACCTGCTGTAGGGAACCTGCTTTAGGGGGAGAGTTGGACTCAATGATCTCCAGAGATCTCTTCCAACTCCTGCAATTCCACGATTCTGTGATATACCCTTTCATGCTGACACAACTTCATTAAGGTATTTGTCTGTTTGAGTACAAAGCTGCAGTCCACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006804-'28-27,'28-26,29-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000038838fB10152
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTATGCTTGAAGGAGCTGGA
R:
AGTTGTGTCAGCATGAAAGGGT
Band lengths:
178-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]