GgaEX1041247 @ galGal4
Exon Skipping
Gene
ENSGALG00000005203 | OLFM3
Description
olfactomedin 3 [Source:HGNC Symbol;Acc:HGNC:17990]
Coordinates
chr8:10422207-10464048:+
Coord C1 exon
chr8:10422207-10422740
Coord A exon
chr8:10423747-10424330
Coord C2 exon
chr8:10463902-10464048
Length
584 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTCTATAAAATACAGTGA
3' ss Score
3.67
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGAGCCCAGCAGCACACTCACTCAACAGAGCCGAGAGCTGCTGCCAGGTCCCGCCGGGAAATAATACTGGGTTGGCAGACAGGGTCTCGGAGAGCCGCCCTAGGACACAGAGGGATGGCGCCTCAAGCCCTCAGCCCACCAGCGCCGCTCCACCACCGTCGCTGGTGATGTCACACCCCCGCCCATCCCACCGGGGCTCCAAGCTGGGCGGGGCGGGCCGGGGCAGCAGAGCCGCTCCGGCAGCGCCGTCCTCACCCGCCCTCTCCGCGTCGCGGCGGTCTGAGGAATGAGCGTCTTCCGGGTGGCCGCCGCCGCTTCCACTCAGGCTCCGGCGGGTGGGCAGCAGAGCGAGGCTGCCGGCGCGGTCTCCGCAAGGAGAGCGGAGTGAATGACCGAGGACAGCGGCGCGGAGAGGTAGCCCCGGGATCAAGATGCAGGCGCCCGCCAGCATCCTCAACCTCCTGCTGCTGTCCTTGCTGGCCGGCCTCGATCATTCCAAG
Seq A exon
TGAGAATATAACAAAAGCAGGAGGTGATACAGAATTAATAACATCAGTTGATAAAGAATTACATCTACATGTTTTTGAACTGCAGCTACCGACAGTACCAGCTATTGCTGTGTTCTGCAGAGACTTACCAGGCAATGCACAGGACATGTGTCAACAGGAACACATGGGCACATTACTGTATCACAGGTTTCCCCAGTCATTTTTCTATCATCAGTTGCACTTGGATCTATTAAAGTCAAAGAGACTGCCTGAAAGCAGACCAAAAACAACAACAAAAAAAAACCAAAACAAACAAACAAAAAAAAAACCACCAACAAAAACTGAATGAAGACTAAAACACTGATGAAGAAAACCAGCTTCAGCTGACAGAAATCTGCTTAGCTCATGTGTCAGAGCGATGTCCCAAAATAACAGGGGGAAGACATGCTCCATCTAATATGTCTGTCACTGACCAGCACTGAAAAATCAGGATGAACCACTACAACCAAATCTGATTACTTGTCTTTGAAACTTCGCTTCTAGTCCTTTTTGGCATGGCGTCTGGTGTCCAAAGGGTGTTAGAAAGGCCTTTTATTCATCTTGAG
Seq C2 exon
ACTCAGATTAGCCCCAAGGAAGGGTGGCAAGTTTATAGTTCAGCCCAGGATCCTGATGGCCGCTGCATTTGTACTGTTGTTGCACCTGAACAAAACCTGTGTTCAAGAGATGCCAAGAGCAGACAGCTTAGACAGCTGCTAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005203_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.020
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF123083=Noelin-1=PU(46.5=95.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCTGAGGAATGAGCGTCT
R:
CTTGGCATCTCTTGAACACAGGT
Band lengths:
342-926
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]