GgaEX1041536 @ galGal4
Exon Skipping
Gene
ENSGALG00000006208 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr5:11451817-11453519:+
Coord C1 exon
chr5:11451817-11451953
Coord A exon
chr5:11452377-11452538
Coord C2 exon
chr5:11453430-11453519
Length
162 bp
Sequences
Splice sites
3' ss Seq
GCTATTTTTTGTGTATCTAGGTT
3' ss Score
7.95
5' ss Seq
AAGGCTAGT
5' ss Score
0.79
Exon sequences
Seq C1 exon
GTCGTTGCACAATTTTCTCTGATCTGAGTGTTGTAACATATGATGGAAATCATTTGGCTTTATTCAAAGAAGCATCATACATTGTTAGTCAGACTCAAGATGAAACTATAACCATCCATGTCCTTGACTGTAGAATG
Seq A exon
GTTTACTTGACTTTACTGCACTAAGGAGGATATATACAGGACTAGAAAGAACCTTCAAAAGCAGTATTCAATGCCTTTGCACTTCATCAGGCTATACCTTGCAGAGTGAGGATTCACACACCCGAATTCCCTATTTTCATTCAACTCTAAATTGGTTTCAAG
Seq C2 exon
AATAATTCTAATTCCACTTCCTTGTGCCTGGCAATGTTGAATTTAACCTATGTATCAAACCAAATTATTATCCATCGTTTAAGTAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006208_CASSETTE7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(27.7=93.5)
A:
NO
C2:
PF0009420=VWD=FE(18.7=100)
Main Inclusion Isoform:
ENSGALT00000010023fB10209
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGTTGCACAATTTTCTCTGA
R:
AGGTTAAATTCAACATTGCCAGGC
Band lengths:
186-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]