GgaEX1041589 @ galGal3
Exon Skipping
Gene
ENSGALG00000005318 | F1NZZ9_CHICK
Description
NA
Coordinates
chr5:8353582-8354850:-
Coord C1 exon
chr5:8354655-8354850
Coord A exon
chr5:8354099-8354250
Coord C2 exon
chr5:8353582-8353746
Length
152 bp
Sequences
Splice sites
3' ss Seq
AAGATGTCTTTTATTTCAAGACA
3' ss Score
2.92
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AAAAGATCAGTAAAGCAGTATATTATACATCCAAGCTTTAACAAGACCACTATGGACTCTGACATCGCTTTACTGCAACTGGCTGAGCCCTTAGAATTCAACCACTATGTGCATCCCGTGTGCCTCCCTGCAAAGGAAGAAGTGGTTCAGCCCTCCAGTGTATGCATTATCACAGGATGGGGAGCACAGGAAGAAG
Seq A exon
ACAGAGAAAAGAGTAAAAAGTTGTATCAGCTGGAAGTTCCCATCTTGATGCTTGAAGCATGTCAGACCTATTACATAAATCTTCCCAGTAGAGTGACTCAGAGGATGATCTGTGCTGGATTCCCTCTGGAAGAAGGCAAGGACTCGTGCACA
Seq C2 exon
GGTGATTCTGGTGGCCCATTAGTTTGTCCTTCAGAAGATGGCTCAGGATTTTACACCCTTCATGGCATCACTAGCTGGGGCTTGGGCTGCGGAAGAAAGAGCTACCCGGGAGTATACACAAATGTTGGTGTTTTTGTGGACTGGATCAAGCAGAGCATTAACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005318-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(27.8=100)
A:
PF0008921=Trypsin=FE(21.4=100)
C2:
PF0008921=Trypsin=PD(20.5=87.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCACTATGTGCATCCCGTG
R:
GCTCTGCTTGATCCAGTCCAC
Band lengths:
253-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]