Special

GgaEX1041598 @ galGal4

Exon Skipping

Gene
Description
ovostatin precursor [Source:RefSeq peptide;Acc:NP_990557]
Coordinates
chr1:75785629-75787290:-
Coord C1 exon
chr1:75787239-75787290
Coord A exon
chr1:75786439-75786522
Coord C2 exon
chr1:75785629-75785805
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTTAATATTTTTCTCCACAGATG
3' ss Score
11.04
5' ss Seq
TTGGTAAAC
5' ss Score
3.22
Exon sequences
Seq C1 exon
CCTGAAGGCATAAGAAGGGAAGAGACCCAGAACTTCTTGATCTGCATGAAAG
Seq A exon
ATGATGTCATTTCTCAAGATGTTGCTATAGATCTACCTACAAATGTGGTAGAAGGATCACCCAGACCTTCCTTTTCTGTTGTTG
Seq C2 exon
GTGACATCATGGGCACTGCCATTCAGAACGTGCACCAGCTCCTTCAGATGCCATTTGGCAATGGGGAACAGAACATGGTCCTGTTTGCACCCAATATCTATGTACTGGATTATCTGGACAAGACAAGACAGCTGAGTGAAGATGTGAAGTCCAAGACCATTGGATACTTAGTGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962-'30-31,'30-30,32-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCCAGAACTTCTTGATCTGC
R:
ACTCAGCTGTCTTGTCTTGTCC
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]