GgaEX1041736 @ galGal4
Exon Skipping
Gene
ENSGALG00000014450 | PABPC1
Description
polyadenylate-binding protein 1 [Source:RefSeq peptide;Acc:NP_001026768]
Coordinates
chr2:128376372-128377360:-
Coord C1 exon
chr2:128377206-128377360
Coord A exon
chr2:128376684-128376768
Coord C2 exon
chr2:128376372-128376502
Length
85 bp
Sequences
Splice sites
3' ss Seq
GGTGTAAAATTAATTTGCAGCCT
3' ss Score
4.32
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
CTAATACATCAACACAAACAATGGGTCCACGTCCTGCAGCAGCAGCTACTGCAGCTACTCCTGCTGTACGCACAGTACCACAGTACAAATATGCTGCAGGTGTTCGTAATCCTCAGCAGCATCTTAATACACAGCCACAGGTTGCTATGCAGCAG
Seq A exon
CCTGCTGTCCATGTGCAAGGCCAGGAACCCTTGACTGCTTCCATGTTGGCTTCTGCCCCTCCACAAGAACAAAAGCAGATGTTAG
Seq C2 exon
GTGAACGTCTATTTCCTCTTATTCAAAGCATGCACCCTACTCTGGCGGGTAAGATCACTGGTATGTTATTGGAGATTGACAACTCTGAACTCCTTCACATGCTCGAGTCTCCTGAGTCTCTTCGTTCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014450-'19-21,'19-20,21-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.885 A=1.000 C2=0.364
Domain overlap (PFAM):
C1:
NO
A:
PF0065813=PABP=PU(27.8=69.0)
C2:
PF0065813=PABP=FE(59.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCAGGTGTTCGTAATCC
R:
ACTCAGGAGACTCGAGCATGT
Band lengths:
181-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]