GgaEX1041738 @ galGal4
Exon Skipping
Gene
ENSGALG00000014450 | PABPC1
Description
polyadenylate-binding protein 1 [Source:RefSeq peptide;Acc:NP_001026768]
Coordinates
chr2:128380601-128383499:-
Coord C1 exon
chr2:128383384-128383499
Coord A exon
chr2:128381990-128382129
Coord C2 exon
chr2:128380601-128380695
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCCTGTTCCCCTGGAATTAGATT
3' ss Score
5.5
5' ss Seq
TTGGTAATG
5' ss Score
4.83
Exon sequences
Seq C1 exon
GTGGTATGTGATGAAAATGGATCCAAGGGTTATGGATTTGTACATTTTGAGACACAAGAAGCTGCAGAAAGAGCTATTGAAAAAATGAATGGTATGCTGCTTAATGACCGCAAAGT
Seq A exon
ATTTGTTGGAAGGTTTAAATCCCGCAAGGAACGTGAGGCAGAGCTTGGAGCCAGAGCAAAGGAATTCACCAATGTTTACATCAAGAATTTTGGAGAAGACATGGATGATGAGAGACTTAAGGAACTCTTTGGCAAGTTTG
Seq C2 exon
GTCCTGCCTTAAGTGTGAAAGTTATGACTGATGAGAGTGGAAAATCCAAGGGCTTTGGCTTCGTTAGTTTTGAAAGACATGAAGATGCCCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014450-'3-2,'3-1,6-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(55.1=100)
A:
PF0007617=RRM_1=PD(1.4=2.1),PF0007617=RRM_1=PU(31.4=45.8)
C2:
PF0007617=RRM_1=FE(44.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTATGTGATGAAAATGGATCCA
R:
TTTTGGGCATCTTCATGTCTTTCA
Band lengths:
210-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]