GgaEX1041742 @ galGal4
Exon Skipping
Gene
ENSGALG00000014450 | PABPC1
Description
polyadenylate-binding protein 1 [Source:RefSeq peptide;Acc:NP_001026768]
Coordinates
chr2:128375996-128376768:-
Coord C1 exon
chr2:128376684-128376768
Coord A exon
chr2:128376372-128376502
Coord C2 exon
chr2:128375996-128376091
Length
131 bp
Sequences
Splice sites
3' ss Seq
GATAACGTTTTTCTCTCTAGGTG
3' ss Score
11.83
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
CCTGCTGTCCATGTGCAAGGCCAGGAACCCTTGACTGCTTCCATGTTGGCTTCTGCCCCTCCACAAGAACAAAAGCAGATGTTAG
Seq A exon
GTGAACGTCTATTTCCTCTTATTCAAAGCATGCACCCTACTCTGGCGGGTAAGATCACTGGTATGTTATTGGAGATTGACAACTCTGAACTCCTTCACATGCTCGAGTCTCCTGAGTCTCTTCGTTCGAAG
Seq C2 exon
GTTGATGAAGCTGTAGCCGTACTACAAGCCCACCAAGCTAAAGAAGCTGCTCAAAAGGCAGTTAATAACCCTACTGGGGTTCCAAGTGTTTAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014450_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.364 C2=0.900
Domain overlap (PFAM):
C1:
PF0065813=PABP=PU(27.8=69.0)
A:
PF0065813=PABP=FE(59.7=100)
C2:
PF0065813=PABP=PD(9.7=22.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTGTCCATGTGCAAGG
R:
TTAAACACTTGGAACCCCAGTAGG
Band lengths:
178-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]