GgaEX1043364 @ galGal4
Exon Skipping
Gene
ENSGALG00000001595 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr17:8290078-8290886:-
Coord C1 exon
chr17:8290818-8290886
Coord A exon
chr17:8290442-8290626
Coord C2 exon
chr17:8290078-8290198
Length
185 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGTGGTACTTTATAGTGC
3' ss Score
7.01
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GTTCTATGTGTTTTTCTGCTCTGTGTGCAACCAGGGACCTGAGTACATCAAGCGCCTGCCCCTGCGATG
Seq A exon
TGCACCTCGATGATCTGAAAGCACTTTGTAAGATATCCTAACAGTGCTAGCTGCACTGGGGGTGTTGCGCAGAGCAGCACTGGGTACAGGAGAAGGGAAGTCCTGCAGGACATGTTGCTTGGCTTTCACTTTTGGAGATGCGAGTGTGAAGTCCCGCAGGAGGCTGTTTTGTAAGCAGTCTACAT
Seq C2 exon
GGTGGACGTGGTCCATCTCGCCCTGTACAACCTGGGCGTGCAGAGCAAGAAGAAGTACTTCGACTTCGAGGAGATCTTGGCCTTCGTGAACCACCACTGGGACCCTCTGCAGCTCGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001595-'11-10,'11-9,12-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=PD(22.6=50.0)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000002421fB10518
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGTGTTTTTCTGCTCTGTGTGC
R:
CTTCCCGAGCTGCAGAGGG
Band lengths:
186-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]