GgaEX1044313 @ galGal4
Exon Skipping
Gene
ENSGALG00000014845 | PLCXD3
Description
phosphatidylinositol-specific phospholipase C, X domain containing 3 [Source:HGNC Symbol;Acc:HGNC:31822]
Coordinates
chrZ:12914295-12970581:-
Coord C1 exon
chrZ:12969704-12970581
Coord A exon
chrZ:12960763-12960935
Coord C2 exon
chrZ:12914295-12915003
Length
173 bp
Sequences
Splice sites
3' ss Seq
GGCTTCTTTTTTCTTTCCAGTAC
3' ss Score
9
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
TGAGACCTTTGGGCCGAGAGCCCGCGTTGCCGCTGAGGGGAGATGGTGACACGGCCCAGCTGGAGGCAAAGGCGAATTCAGTAAAAGATAAGAAGGAGCCGCGGCACGAGGTCTGCCGCCCAGCGCCCGCTCCTCGTCCCCTGAGTTACCTGGGACGGGCTAAGGCTCCCGCCGCCAACCCCCACCCTCCGCGGGGACACGCCGGCCCCGCCAGCAGAGCACCGCATCAGAACCGCGCTCCGCGGGCGGTCAGAGCCCGGCCGGGGCGGGGCAGCGGGCGGGGGTGAGGCGGCGAGGCACGGGGCGGTGCCGGGCGGGCGGGGCCGTGCCGGGACCAGGCGGGCTGGAACGAGTGGTTGCGGCGGCAGTAGGAGAGCGGTCGGGGTACGGCGGCGGCATGGCTTCGTCGCAAGGCAAGAACGAACCGCGGTTCGCCGACTGGATGGCAGCTCTGCCCGACAGCATCCGCAGCACCCCGCTCACCAACCTGGCCATCCCAG
Seq A exon
TACTACAGCTTTTTCCCAAAGTCATCTTACCATCTCCAGGGATGAAATGGAGGCTTTTGTGGCATGGAGATGCTCTGATTTACAGAACCACGGAATCACAGGGGTTTGAAGGGACGCCGGGAGATCATTGAGTCCAACCCCTCTGCTAAAGCAGGCTACAATAGGTCACACAG
Seq C2 exon
GTTCCCATGACTCCTTTAGCTTCTACATTGATGAAGCCTCTCCAGTTGGGCCTGAACAGCCAGAAACGGTCCAGAACTTTGTGTCTGTTTTTGGGACTGTGGCTAAAAAGCTGATGAGGAAGTGGTTGGCTACACAGACCATGAACTTCACCAGCCAGCTGGGTGCAGGTATACGGTATTTTGATCTTAGGATTTCCACTAAGCCCAGAGACCCAGACAATGAACTCTACTTTGCTCATGGCTTATTCAGTGCCAAAGTTAAGGAAGGCCTGGAAGAGATCAATGCATTCCTTGCTGACCACCCAAAAGAAGTGATTTTCTTGGACTTCAATCATTTCTATGGAATGCAGAAATACCATCACGAAAAGCTTGTCCAGATGCTCAAGGACACGTATGGAAACAAAATGTGTCCTGCTATATTTGCCCATGAAGTAAGCCTCCAGTACCTGTGGGAAAAGGAACACCAAGTGCTGGTTTTTTATCACAGCCCAGTGGCTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014845_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.256 C2=0.000
Domain overlap (PFAM):
C1:
PF034908=Varsurf_PPLC=PU(55.3=74.3),PF0038814=PI-PLC-X=PU(4.7=22.9)
A:
NO
C2:
PF034908=Varsurf_PPLC=PD(42.6=8.4),PF0038814=PI-PLC-X=PD(94.7=67.9)
Main Inclusion Isoform:
ENSGALT00000023962fB10666
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCAAGGCAAGAACGAACC
R:
AGCTGGCTGGTGAAGTTCATG
Band lengths:
254-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]